• bioinfornatics (14/14) Nov 20 2012 hi why whith this code : http://dpaste.dzfl.pl/474dd9f6
• bearophile (5/7) Nov 20 2012 See:
• bioinfornatics (2/9) Nov 20 2012 thanks i vote up for your request is really a need
• bioinfornatics (12/24) Nov 20 2012 I try to use :
• bioinfornatics (22/22) Nov 20 2012 foreach( size_t index, Fastq data; parallel(
• bearophile (5/7) Nov 20 2012 Try to minimize the code that produces this problem, so if it's a
• bearophile (6/7) Nov 20 2012 Generally if you want to help who gives help you have to show the

"bioinfornatics" <bioinfornatics fedoraproject.org> writes:

hi why whith this code : http://dpaste.dzfl.pl/474dd9f6

i get these errors:
parser/fasta.d(171): Error: cannot infer argument types
parser/fasta.d(176): Error: undefined identifier index, did you 
mean template indexed(Source,Indices)?
parser/fasta.d(177): Error: undefined identifier index, did you 
mean template indexed(Source,Indices)?
parser/fasta.d(179): Error: undefined identifier index, did you 
mean template indexed(Source,Indices)?
parser/fasta.d(180): Error: undefined identifier index, did you 
mean template indexed(Source,Indices)?
parser/fasta.d(183): Error: undefined identifier 'header'


what is wrong at line 171 ? i am explicit i said i want a counter 
iterator and a Fasta struct!

"bearophile" <bearophileHUGS lycos.com> writes:

bioinfornatics:

 what is wrong at line 171 ? i am explicit i said i want a 
 counter iterator and a Fasta struct!

See:
http://d.puremagic.com/issues/show_bug.cgi?id=5550

Bye,
bearophile

"bioinfornatics" <bioinfornatics fedoraproject.org> writes:

On Tuesday, 20 November 2012 at 11:33:23 UTC, bearophile wrote:
 bioinfornatics:

 what is wrong at line 171 ? i am explicit i said i want a 
 counter iterator and a Fasta struct!

 See:
 http://d.puremagic.com/issues/show_bug.cgi?id=5550

 Bye,
 bearophile

thanks i vote up for your request is really a need

"bioinfornatics" <bioinfornatics fedoraproject.org> writes:

On Tuesday, 20 November 2012 at 12:32:45 UTC, bioinfornatics 
wrote:
 On Tuesday, 20 November 2012 at 11:33:23 UTC, bearophile wrote:
 bioinfornatics:

 what is wrong at line 171 ? i am explicit i said i want a 
 counter iterator and a Fasta struct!

 See:
 http://d.puremagic.com/issues/show_bug.cgi?id=5550

 Bye,
 bearophile

 thanks i vote up for your request is really a need

I try to use :
      property
     Tuple!(size_t, Fastq) front(){
         Tuple!(size_t, Fastq) result;
         result[0] = _i;
         result[1] = _extract( _sections[0] );
         _i++;
         return result;
     }


but it seem is not aggregate by the foreach loop :-(

"bioinfornatics" <bioinfornatics fedoraproject.org> writes:

     foreach( size_t index, Fastq data; parallel( 
fastqFile.byFastq() ) ){
         assert(data.header   == fastqList[index].header  , text( 
"Error fastq n°", index, " do not have the right header"   ) );
         assert(data.sequence == fastqList[index].sequence, text( 
"Error fastq n°", index, " do not have the right sequence" ) );

-----
/usr/include/d/std/parallelism.d(3831): Error: delegate dg 
(Tuple!(ulong,Fastq)) is not callable using argument types (Fastq)
/usr/include/d/std/parallelism.d(3839): Error: delegate dg 
(ulong, Tuple!(ulong,Fastq)) is not callable using argument types 
(ulong,Fastq)
/usr/include/d/std/parallelism.d(3317): Error: template instance 
std.parallelism.ParallelForeach!(byFastq) error instantiating
     instantiatied in ../src/parser/fastq.d(237): 
parallel!(byFastq)
../src/parser/fastq.d(237): Error: template instance 
std.parallelism.parallel!(byFastq) error instantiating
../src/parser/fastq.d(237): Error: cannot uniquely infer foreach 
argument types



fastqFile.byFastq() return a Tuple!(ulong,Fastq) in this case 
foreach fail to aggregate correctly

"bearophile" <bearophileHUGS lycos.com> writes:

bioinfornatics:

 fastqFile.byFastq() return a Tuple!(ulong,Fastq) in this case 
 foreach fail to aggregate correctly

Try to minimize the code that produces this problem, so if it's a 
real problem it becomes fodder for Bugzilla.

Bye,
bearophile

"bearophile" <bearophileHUGS lycos.com> writes:

bioinfornatics:

 but it seem is not aggregate by the foreach loop :-(

Generally if you want to help who gives help you have to show the 
full code (or its compilable reduction) and copy&paste the error 
you get...

Bye,
bearophile